Modeling errors in NOE data with a log-normal distribution improves the quality of NMR structures.

نویسندگان

  • Wolfgang Rieping
  • Michael Habeck
  • Michael Nilges
چکیده

The distribution of the deviation of calculated from measured nuclear Overhauser effect (NOE) intensities is a priori unknown. The use of a log-normal distribution to describe these deviations permits the direct calculation of a structure from the measured intensities without first converting them into distance bounds. We show that the log-normal distribution is a natural choice for describing errors in NOE data and that it improves the accuracy, precision, and quality of the calculated structures compared to the usual bounds representation.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Evaluation and Application of the Gaussian-Log Gaussian Spatial Model for Robust Bayesian Prediction of Tehran Air Pollution Data

Air pollution is one of the major problems of Tehran metropolis. Regarding the fact that Tehran is surrounded by Alborz Mountains from three sides, the pollution due to the cars traffic and other polluting means causes the pollutants to be trapped in the city and have no exit without appropriate wind guff. Carbon monoxide (CO) is one of the most important sources of pollution in Tehran air. The...

متن کامل

A Hausdorff-based Noe Assignment Algorithm Using Protein Backbone Determined from Residual Dipolar Couplings and Rotamer Patterns.

High-throughput structure determination based on solution Nuclear Magnetic Resonance (NMR) spectroscopy plays an important role in structural genomics. One of the main bottlenecks in NMR structure determination is the interpretation of NMR data to obtain a sufficient number of accurate distance restraints by assigning nuclear Overhauser effect (NOE) spectral peaks to pairs of protons. The diffi...

متن کامل

Log-Normal and Mono-Sized Particles’ Packing into a Bounded Region

Many systems can be modeled with hard and various size spheres, therefore packing and geometrical structures of such sets are of great importance. In this paper, rigid spherical particles distributed in different sizes are randomly packed in confined spaces, using a parallel algorithm. Mersenne Twister algorithm was used to generate pseudorandom numbers for initial coordination of particles. Di...

متن کامل

Improved reliability, accuracy and quality in automated NMR structure calculation with ARIA

In biological NMR, assignment of NOE cross-peaks and calculation of atomic conformations are critical steps in the determination of reliable high-resolution structures. ARIA is an automated approach that performs NOE assignment and structure calculation in a concomitant manner in an iterative procedure. The log-harmonic shape for distance restraint potential and the Bayesian weighting of distan...

متن کامل

Prediction of Electrofacies Based on Flow Units Using NMR Data and SVM Method: a Case Study in Cheshmeh Khush Field, Southern Iran

The classification of well-log responses into separate flow units for generating local permeability models is often used to predict the spatial distribution of permeability in heterogeneous reservoirs. The present research can be divided into two parts; first, the nuclear magnetic resonance (NMR) log parameters are employed for developing a relationship between relaxation time and reservoir poro...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Journal of the American Chemical Society

دوره 127 46  شماره 

صفحات  -

تاریخ انتشار 2005